Publications



In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding.

Nucleic Acids Research (2017).


Intragenic DNA methylation prevents spurious transcription initiation.

Nature. Volume 543 Issue 7643 pp.72-77 (2017).


High-throughput single-base resolution mapping of RNA 2΄-O-methylated residues.

Nucleic Acids Research. Volume 45 Issue 3 pp.1433-1441 (2017).


The RNA Epistructurome: Uncovering RNA Function by Studying Structure and Post-Transcriptional Modifications.

Trends in Biotechnology. Volume 35 Issue 4 pp.318-333 (2017).


The long intergenic non-coding RNA CCR492 functions as a let-7 competitive endogenous RNA to regulate c-Myc expression.

Biochimica et Biophysica Acta. Volume 1859 Issue 10 pp.1322–1332 (2016).


Methylation-assisted bisulfite sequencing to simultaneously map 5fC and 5caC on a genome-wide scale for DNA demethylation analysis.

Nature Protocols. Volume 11 pp.1191–1205 (2016).


RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data

Bioinformatics (2015).


DNA methylation and demethylation dynamics

Oncotarget (2015).


TET1 is controlled by pluripotency-associated factors in ESCs and downmodulated by PRC2 in differentiated cells and tissues

Nucleic Acids Research. Volume 43 Issue 14 pp.6814-6826 (2015).


Single-Base Resolution Analysis of 5-Formyl and 5-Carboxyl Cytosine Reveals Promoter DNA Methylation Dynamics

Cell Reports. Volume 10 Issue 5 pp.674-683 (2015).


TET1 is a tumour suppressor that inhibits colon cancer growth by derepressing inhibitors of the WNT pathway

Oncogene (2014).


Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptome

Genome Biology. Volume 15 Issue 20 (2014).


High-throughput single nucleotide variants discovery in E14 mouse embryonic stem cells provides a new reference genome assembly

Genomics. Volume 104 Issue 2 pp.121-127 (2014).


Myc and Max Genome-Wide Binding Sites Analysis Links the Myc Regulatory Network with the Polycomb and the Core Pluripotency Networks in Mouse Embryonic Stem Cells

PLoS ONE. Volume 9 Issue 2 (2014).


Dnmt3L Antagonizes DNA methylation at Bivalent Promoters and Favors DNA methylation at Gene Bodies in ESC

Cell. Volume 155 Issue 1 pp.121-134 (2013).


Genome-wide analysis identifies a functional association of Tet1 and Polycomb PRC2 in mouse embryonic stem cells

Genome Biology. Volume 14 Issue 8 (2013).


MREdictor: a two-step dynamic interaction model that accounts for mRNA accessibility and Pumilio binding accurately predicts microRNA targets

Nucleic Acids Research. Volume 41 Issue 18 pp.8421-8433 (2013).


FOSL1 controls the assembly of endothelial cells into capillary tubes by direct repression of alpha-v and beta-3 integrin transcription

Molecular and Cellular Biology. Volume 33 Number 6 pp.1198-1209 (2013).


Myc Regulates the Transcription of the PRC2 Gene To Control the Expression of Developmental Genes in Embryonic Stem Cells

Molecular and Cellular Biology. Volume 32 Number 4 pp.840-851 (2012).


Endothelial Cell Adhesion to the Extracellular Matrix Induces c-Src-Dependent VEGFR-3 Phosphorylation Without the Activation of the Receptor Intrinsic Kinase Activity

Circulation Research. Volume 106 Number 12 pp.1839-1848 (2010).